Tools For Error-Correcting Solid Reads

Question

[lin.barnum]

There are a bunch of tools for error-correcting Illumina reads but not that many on the SOLiD side. Does anyone have experience with error-correcting SOLiD reads? What are the best tools for this?

Answer 1

[Ashutosh Pandey]

Hi,

Hope this helps. This script is from Brent Pedersen.

https://github.com/brentp/bio-playground/blob/master/solidstuff/solid-trimmer.py

Thanks