Question

Haplotypes For Each Sample

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12.3 years ago

AsoInfo ▴ 300

Hello all,

I have some samples for haplotyping. I have used Haploview for LD plot and haplotypes. Is there any way to have the haplotypes for each sample in Haploview. It gave me the individual summary for each sample but actually only in percentages. I want to have the haplotypes written for each sample.

Kindly let me know if there are other preferred softwares for this purpose.

Thanks in advance!

haplotype haploview • 2.9k views

ADD COMMENT • link updated 12.3 years ago by Deniz ▴ 140 • written 12.3 years ago by AsoInfo ▴ 300

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I got a similar problem! Have you solved this one? There is also a question at the RG: https://www.researchgate.net/post/How_to_link_haploblock_identified_by_Haploview_to_subjects

ADD REPLY • link 5.0 years ago by rimgubaev ▴ 340

score 0 · Answer 1 · 2012-08-12

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12.3 years ago

Deniz ▴ 140

Hi,

What format is your data in?

ADD COMMENT • link 12.3 years ago by Deniz ▴ 140

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please add this as a comment not as an answer then delete this answer (we will soon have a feature to that allows one to move an answer to a comment). Thanks

ADD REPLY • link 12.3 years ago by Istvan Albert 101k

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Thanks for your reply!

The data is genotypic (based on alleles). It is in PED format (as required by Haploview)

ADD REPLY • link 12.3 years ago by AsoInfo ▴ 300