Comparing Cdna Sequence From Different Species

Question

[jackuser1979]

I have insect species transcriptome assembly and I have annotated this transcriptome assembly to close insect species Ensembl cDNA sequence. I have set of annotated transcript ids. Now I want to compare this set of annotated transcript ids to other species cDNA sequence. How can I do that?

Answer 1

[JC]

Maybe you can use the Ensembl Compara API: http://uswest.ensembl.org/info/docs/api/compara/compara_tutorial.html