Predicted Relative Metabolomic Turnover (Prmt):

Question

[vijay]

Could someone let me know if there is a tool available to perform Predicted Relative Metabolomic Turnover (PRMT) calculations.

Your responses are highly appreciated.

-Vijay

Answer 1

[Josh Herr]

You're wondering if there is a package that automatically generates PRMT values?

I am unaware of a pre-packaged point and click utility, but it's a pretty straightforward process (see Larsen et al 2011) for metagenomic data. I was able to calculate PRMT values for soil microbial transcripts pretty quickly after reading that paper. You can quickly do this in the bash shell, with AWK/SED, in Python/Perl/R, or (gasp) Excel (or some other spread sheet program).

[vijay]

Thanks for your response. I shall go through this paper and try to generate the PRMT values for my data.

[alowi33]

Share the love Josh! Would love to see your codes, especially for R-cran or bash shell.