Question

Visualizing Genes On A Chromosome According To Their Position

2

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12.3 years ago

Mandar ▴ 180

Hi all, i have 700 genes of drosophila and i want to show them all on the chromosome according to there position on linear scale. i want a visualisation same as NCBI sequence viewer.But i want to show only my 700 genes..can anybody suggest me any tool or utility??

Thanks in advance.

genes chromosome • 5.3k views

ADD COMMENT • link updated 12.3 years ago by Mary 11k • written 12.3 years ago by Mandar ▴ 180

score 3 · Answer 1 · 2012-09-27

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12.3 years ago

Sean Davis 27k

Have a look at the geneplotter, ggbio, or Gviz packages for bioconductor.

ADD COMMENT • link 12.3 years ago by Sean Davis 27k

score 1 · Answer 2 · 2012-09-27

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12.3 years ago

Mary 11k

I think it could be relatively quick to do that in WebGBrowse. http://gmod.org/wiki/WebGBrowse

ADD COMMENT • link 12.3 years ago by Mary 11k