Adding Missing Atoms To Pdb

Question

[Raygozak]

Which program can i use to complete the structure of a pdb with missing atoms?, i looked several tools online like PDB2PDR, and what i found some are commercial tools, but all i want to do is to complete it.

Thanks

Answer 1

[Rm]

Try to model them using modeller or other modelling tools: Missing residues: demonstrates using Modeller to fill in missing residues.

ProtCID Adding missing residues to protein structure file.

http://salilab.org/modeller/wiki/Missing%20residues

[Raygozak]

Thanks, i was confused because they said adding missing residues, i was interpreting as residues=aminoacids, but seems i was wrong.

Answer 2

[Khader Shameer]

I usually use MaxSprout with DeepView . Also check a detailed discussion on same topic here

Answer 3

[dasdevashishdas]

Anyone who is having the same problem, Please use http://lorentz.dynstr.pasteur.fr

Answer 4

[ashutosh.gupta]

Check this out. It is very useful and working. https://github.com/ashutoshcipher/Add-missing-Residues-to-PDB-files