Noiseq Installation Error

Question

[narges]

Hi all, I am trying to install NOISeq package from Bioconductor using commands :

source("http://bioconductor.org/biocLite.R")
biocLite("NOISeq")

but there is an error when installing:

Warning message: package ‘NOISeq’ is not available (for R version 2.15.1)

but in the manual it is mentioned that NOISeq is available for R (>=2.0.3) so why is that? thanks in advance

Answer 1

[Armand]

Just upgrade the bioconductor (NOISeq is available only in Bioconductor version 1.11):

    source("http://bioconductor.org/biocLite.R")
    biocLite("BiocUpgrade")
    biocLite("NOISeq")

[fo3c]

How is this useful now, when the answer was already known 4 months ago?

Answer 2

[Istvan Albert]

You seem to have asked this on multiple sites.

Usually the answers will be found on the mailing list that corresponds to the tool that you are running. In this case the Bioconductor mailing list:

https://stat.ethz.ch/pipermail/bioconductor/2012-October/048479.html

[narges]

yes actually I got the answer there. I should have upgraded the biocInstaller package and now it works. You can delete the post it is not relevant. And thank you for the suggestion.

[Istvan Albert]

The best is to just add the answer if you found out what you needed from other sources - that way people can find their way later.

Answer 3

[narges]

The problem was due to the BiocInstaller package. So after upgrading it and reinstalling the NOISeq now it works. So the NOISeq is available in Bioconductor version 1.11.