Hi All,
Have you ever try paraHaplo software (http://www.scfbm.org/content/6/1/10) ? I would like to use it because of its capabality to multiprocessing with MPI. I have used Pierre's script converttpedto_hapmap.pl to convert my tped data file to hapmap format but I met a problem.
When I'm trying to run the haplotypePhasing module with command "../../src/SNP/bin/haplotypePhasing.exe ../../data/test.tped.hapmap hblockdef.txt phasedout_test.txt 1 9331"
I have got such error "input file open error! FileName:phasedouttest.txt_output0"
Unfortunately I dont know what could be a real problem. Maybe it is paraHaplo problem or hapMap format generated by scritp converttpedto_hapmap.pl . So, I wondering if you have any experience with paraHaplo?
Be happy and healthy,
cman
