Question

Any Reference Guided Assembly Tool Available Now

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12.1 years ago

zhuwei.cug ▴ 30

Could anyone suggest some reference guided assembly tools for cultivars' genome assembly?

reference assembly • 3.4k views

ADD COMMENT • link updated 12.1 years ago by Ali ▴ 140 • written 12.1 years ago by zhuwei.cug ▴ 30

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Please provide more context. What do you mean by 'cultivars'? Any plant? Specific ones? What reference genome do you have available and which species have you sequenced and hope to assemble?

ADD REPLY • link 12.1 years ago by Malachi Griffith 20k

score 0 · Answer 1 · 2012-10-20

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12.1 years ago

Ali ▴ 140

I think for your purpose Bowtie 2 is currently the best.

ADD COMMENT • link 12.1 years ago by Ali ▴ 140