How To Find Fusion Gene With Trinity ?

Question

[Nicolas Rosewick]

Hi,

I tried trinity one my data to find fusion gene. After trinity, I've a transcriptiome for each of my samples. Is there a way to merge them and then find putative fusion gene in it ?

Thanks,

N.

[Sean Davis]

What organism? If you have a transcriptome, have you mapped it back to the known transcripts or genome?

[Nicolas Rosewick]

no there is no transcriptome available. Maybe I can try with a related species transcriptime.