How Do I Make Blast Profiles? Examples Shown

Question

[shane.neeley]

Hi,

I was wondering if you know what commands to use on the blast command line tool, or what program to download to generate psi-blast profiles like the ones below:

http://www.cbs.dtu.dk/biotools/Blast2logo-1.1/blastprofile.html

http://sparks.informatics.iupui.edu/SPINE-X/eg.pssm

[shane.neeley]

Well now I know to use blastpgp to make the profiles.

[Michael Schubert]

Have you tried reading the output of "blastpgp -help" then or "man blastpgp"?