Chip-Exo Illumina Data Sets?

Question

[14134125465346445]

Does anybody know of any publicly available ChIP-exo datasets done with Illumina sequencing?
This paper seems to be a recent reference to the technique:
http://www.ncbi.nlm.nih.gov/pubmed/22153082

But they did SOLiD sequencing, I am looking for Illumina sequencing of ChIP-exo to test it through a method I am developing.

Any ideas?

[matted]

As far I know, the Pugh lab is the only group that's published ChIP-exo data so far. They seem attached to SOLiD, so no dice on Illumina data. A cursory search of the SRA supports this, though I'd be happy to be proven wrong:

http://sra.dnanexus.com/?result_type=Study&show=&q=chip-exo

[14134125465346445]

Yes, these two are also Chip-exo from SOLiD, it seems it's tricky to get it to work with Illumina NGS.

[Raygozak]

Have you tried converting the reads to sequence space and working with that?

[14134125465346445]

Do you think that would turn the reads into Illumina-like?

[Raygozak]

Besides machine and assay biases, as far as i know SOLID sequencing provides an error correction code for the reads, i don't see a problem with just converting them to sequence space. You may need to scale quality but i believe the converting tool would take care of that.

Answer 1

[UnivStudent]

New article this week in Nature from the Pugh lab: Genomic organization of human transcription initiation complexes. It uses HiSeq data this time instead of SOLiD as in their first paper. SRA Accession: SRA067908.