Bed For Agilent Sureselect All Exon Kits ?

Question

[Pierre Lindenbaum]

My lab has sequenced an exome using the "Agilent SureSelect All Exon Kits" ( http://www.genomics.agilent.com/CollectionSubpage.aspx?PageType=Product&SubPageType=ProductDetail&PageID=3041 )

Does anyone knows where I can find a BED describing the captured regions ?

P.

Answer 1

[Pierre Lindenbaum]

Ok https://earray.chem.agilent.com/suredesign/index.htm was the right place to find the BED. I was able to log-in today

Thank you all.

[glocke01]

I can confirm that, 5 years later, this solution still works. I had to create an account at suredesign, then click "find designs", then click "agilent catalog", then you get to a list of a bunch of sureselect kits with download links including .bed files.

[svp]

Even after 8 years, this solution still works. :)

Answer 2

[JC]

According to this post Human Exome Capture Library Coordinates Download , maybe you can find the information in Agilent's Earray https://earray.chem.agilent.com/earray/

[Pierre Lindenbaum]

its says it moved to https://earray.chem.agilent.com/suredesign/ , same information from https://twitter.com/GenBioStats/status/271981044129992704 . But I still cannot register+login for the moment.

[JC]

I don't have access too, maybe next week I can check with some coworkers who has an account in the EArray.

[User 59]

They're not on eArray any more, I checked today. If you have an eArray login, that will work for SureDesign

[predeus]

They are certainly still there, starting with version 4.0

Answer 3

[javiflaja]

June 2023, Solution is still applicable. https://earray.chem.agilent.com/suredesign/index.htm

Find designs tab - DNA - select your zip

Answer 4

[Момчил]

I confirm that the answers above do work in 2022 as well.

1. Go to https://earray.chem.agilent.com/suredesign/search.htm
2. Login/register.
3. Go to the "Find Designs" tab and search for the name of your kit.
4. Download the zip with .BED files for Hg19 or Hg38 respectfully.
5. Do not forget Bioinformatics is epic!

[amy__]

Hi,

I can't find the corresponding Hg38 bed file for: SureSelect_All_Exon_50mb_with_annotation_hg19.regularOnly bed file on the login page, would you be able to email it to me if you can find it? Thanks! Amy

[e-mail]