Casp Result About Prediction Tools

Question

[Elisa]

Hi all

Where can I find CASP result to get prediction accuracy of disorder protein?

Thanks

[Neilfws]

Please be more specific. Do you have a particular protein for which you want to find CASP predictions? Or are you interested in CASP results for disordered proteins in general? And by disordered, I think you mean "proteins with disordered regions", since completely disordered proteins do not have structure, predicted or otherwise.

[Bilouweb]

I think the question is clear when you try to find the results of CASP 9 experiment about disordered region predictions... There is a pdf of the presentation : http://www.predictioncenter.org/casp9/doc/presentations/CASP9_DR.pdf

But I can't find the raw data...

Answer 1

[Bilouweb]

Raw data of disorder prediction from the CASP 9 experiment can be found here.

For each couple target/group, you have a file with 3 columns: amino acid name, D if disorder or O if order, and a probability score for disorder. An example:

V D 0.4354
L D 0.7259
N D 0.7208
N D 0.5003

Now if you only need the prediction accuracy of each group, see page 12 of the DR results presentation.