Entering edit mode
12.0 years ago
mary
▴
210
Hello all
I am trying to found recombination rate by PASE software on genotyped data, i made a file.recode.phase.inp by plink and insert this file to PHASE and use this command ./PHASE file.recode.phase.inp 100 1 100 I get a several file that on of them are file_recom, that it contains below information:
9.40459e+06 9.42666e+06 9.44903e+06 9.54208e+06 9.67384e+06 9.72053e+06 9.74082e+06 9.77567e+06 9.81216e+06 9.84582e+06 0.000313808 0.612861 1.78856 5.96733 0.209577 0.363747 1.61015 1.42687 0.964002 0.336294
as Iam new in Phase anlysis i dont konw which in recombination rate , what is the other one?
is there any one that guide me ?
thanks a lot
I don't remember exactly. I think the first column is background level and the other are how much each locus is greater (or smaller) than the background. However, it's written in the manual. You should give a look!