Entering edit mode
11.9 years ago
Dollas Salleh
▴
70
Dear all,
Actually I need to go through docking simulation for my study. I'm trying using autodock 4.2.5. I already successful until stage autogrid to save DPF file. Ok. After I'm trying to run autogrid, I'm trying to click button "Run autogrid". Nothing happens and I'm get this message.
C:/ Program' is not recognized as an internal or external command, operable program or batch file.
Traceback (most recent call last):
File "C:\Autodock\MGLToolsPckgs\ViewerFramework\VF.py", line 898, in tryto
result = command( *args, **kw )
File "C:\Autodock\MGLToolsPckgs\AutoDockTools\autostartCommands.py", line 898, in doit
cmd = ("cd \"%s\" && "+cmd ) % wd
TypeError: cannot concatenate 'str' and 'list' objects
Exception in Tkinter callback
Traceback (most recent call last):
File "C:\Autodock\lib\lib-tk\Tkinter.py", line 1403, in __call__
return self.func(*args)
File "C:\Autodock\lib\lib-tk\Tkinter.py", line 498, in callit
func(*args)
File "C:\Autodock\MGLToolsPckgs\AutoDockTools\autostartCommands.py", line 958, in saveLog
if self.WinCmd.ok.configure()['state'][-1] == 'normal':
AttributeError: AutoGridStarter instance has no attribute 'WinCmd'
I'm being stuck in this stage almost 1 month. I hope someone can help me solve this problem. Because this is for my master project and I would like to publish a paper as soon as possible. I would appreciate if someone can help me. I can pay for money if you want. This is my email naimhairul@gmail.com.
Thanks a million
Check your installation. It seems an installation problem with the paths..
Check the path to your default directory (File->Preferences). Make your current directory as your default directory. Just on a safe side, Put all your .exe files / input files / executed files in one folder to avoid any confusion or to generate any error. Hopefully, it will help.
Use ubuntu/linux. Simply install autodock and autogrid by
sudo apt-get install autodock
Hi!
I have a problem with Autodock 4.2 exactly I have problem with run autogrid and run autodock where autogrid and autodock processes (calculation) not execute successfully.
ERROR: can't find or open receptorPDBQT file "hsg1.pdbqt"
andERROR: Unsuccessful completion
As for run autodock
Please help me because I'm a beginner