How To Get An Annotation File That Annotates All The Go Terms In A Different File

Question

[zitona_tracker]

I downloaded a Full Gene Ontology Term file from the following link: http://www.geneontology.org/GO.downloads.ontology.shtml

The file that i downloaded is the one in the first row. It has around 30,000 GO Terms. My question is: Where can I find another file that has the gene annotations of all the GO Terms in the first file?

[Pierre Lindenbaum]

cross posted on SO: http://stackoverflow.com/questions/14040316

[Pierre Lindenbaum]

and I don't understand your question. What is "the file I downloaded is the one in the first row" ?

[Damian Kao]

If you are looking for GO terms that correspond to gene annotations, then you are going to have to specify what organism you are working with. Not all organisms have pre-generated GO annotations. You will have to use various software (blast2go, interproscan) to generate the GO terms for your gene-set.

Answer 1

[Khader Shameer]

I think the zitona_tracker is looking for Gene Ontology Annotation files in GAF format. Annotation data is available via GOA-EBI or Gene Ontology annotations repository