Is There A Way To Recalibrate Genotype Calls Made Via Samtools/Bcftools?

Question

[Dan]

Hi,

I've read that genotype calls produced by bcftools are 'inaccurate' as mentioned in Why does samtools/bcftools give incorrect genotypes and innacurate quality scores?.

Is there a tool to go through and 'recalibrate' using the PL information?

Cheers, Dan.

[Dan]

This could be done with a simple Perl script I guess...