Config File For Running Small Files On Soapdenovo.

Question

[joaslucas]

I have a single, small RNA-seq file from bacteria (~2 millions reads). it is actually my unaligned file of SOAPaligner that I got after getting rid of Macrophage RNA contamination. I want to use this single file for denovo transcriptome assembly in SOAPdenovo. How can I make my config file in this case.

Answer 1

[SES]

There is an example config file in the manual, and at the bottom of the SOAPdenovo-Trans webpage. You can modify that file based on your data and it should work fine.