Generating Artificial Sequences And Implant Motifs

Question

[sathipkr]

Hi I am working on a project where I need to generate some artificial sequence and implant some motifs to do some algorithm benchmarking.How can I do this using PWM based tools.Links would be helpful. Thanks much Satwik

[Giovanni M Dall'Olio]

can you please explain what is PWM? Position Weighted Matrix?

Answer 1

[vipin.ts]

You can generate sample sequence using the following tool from the public server.

http://galaxy.raetschlab.org/tool_runner?tool_id=motifgen-fasta_1