Convert Nucleotide Gi Numbers To Arabidopsis At Numbers

Question

[K Browning]

I received a large amount of proteomic data, but it is tagged to the nucleotide gi number and I want the Arabidopsis AT number for the gene. Is there a method to do this easily?

[Thaman]

is it converting GI number file to AT number? Please put some sample of the file.

Answer 1

[Darked89]

Try Picr @EBI. http://www.ebi.ac.uk/Tools/picr/

It maps one set of identifiers to another, including TAIR. Be aware that for some IDs there may be not one-2-one mappings (i.e. Q9FGQ2 maps to AT5G50800.1 and At5g50800 but this is OK).

Answer 2

[Bert Overduin]

Another option would be Ensembl Genomes Plants BioMart:

http://plants.ensembl.org/biomart/martview