Hi,
Simple question : Where can I download all rRNA sequences (from human or other species). I found some of them using ensembl biomart but is there maybe other places to find them ?
Thanks
N.
Hi,
Simple question : Where can I download all rRNA sequences (from human or other species). I found some of them using ensembl biomart but is there maybe other places to find them ?
Thanks
N.
Go to http://central.biomart.org/ click on Ensembl, Restrict search Gene biotype as rRNA will give the organism specific list of rRNA regions in the genome.
http://www.ncbi.nlm.nih.gov/nuccore?db=nucleotide&cmd=search&term=rRNA[Feature+key]
Found 5487260 nucleotide sequences.
:-)
Rfam database :a collection of RNA families http://rfam.sanger.ac.uk/
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That's indeed the best solution. One thing to add: to download sequences you gotta click on the attribute and select sequence instead of regions.