How Do I Get A Gff Files Or Make My Own For A Bacteriophage?

Question

[joaslucas]

Hi guys, I need to get a GFF file for a bacteriophage for RNA counts. Can I get this GFF or GTF file somewhere? Can I download any sequence from NCBI and make my own GFF or GTF file? Thanks.

[Ying W]

Hi joaslucas, you will need to provide a bit more information before we can help you such as what RNA counts do you have (from RNA-seq? if so about how many reads) what bacteria are you interested in. Do you already have counts? Do you understand what gff and gtf files are and what they are used for? What software do you need these GFF files for?