Question

Running A Somatic Sniper With Marked Duplicate And Sorted Bam File.

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11.7 years ago

kulkarni.aishwarya87 ▴ 10

Hi for running the bam file through somatic sniper, do we need a marked duplicate bam file? Thanks

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ADD COMMENT • link updated 11.7 years ago by Chris Miller 22k • written 11.7 years ago by kulkarni.aishwarya87 ▴ 10

score 0 · Answer 1 · 2013-03-20

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11.7 years ago

Chris Miller 22k

Yes, you should mark duplicates before running somatic sniper.

ADD COMMENT • link 11.7 years ago by Chris Miller 22k