Question

Rna Secondary Structure Homolgy Search

2

Entering edit mode

11.9 years ago

Nicolas Rosewick 11k

Hi,

I've several sequences and I want to check if there is known secondary structure into these sequences. Is there a tool to check if there are structure homolgies with known transcripts (mRNA,tRNA,miRNA,...)

Thanks

N.

rna homology • 2.4k views

ADD COMMENT • link updated 11.2 years ago by JC 13k • written 11.9 years ago by Nicolas Rosewick 11k

Ram · Answer 1 · 2013-03-25

1

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11.9 years ago

Medhat 9.8k

I think this software may help PHMMTS it will Do local alignment to an unfolded sequence by folded structure.

ADD COMMENT • link updated 5.2 years ago by Ram 44k • written 11.9 years ago by Medhat 9.8k

score 0 · Answer 2 · 2013-12-19

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11.2 years ago

JC 13k

Try Sean Eddy's Infernal with RFAM models.

ADD COMMENT • link 11.2 years ago by JC 13k