Question

How To Set Minimum Read Depth Of 20 While Using Vcfutils.Pl Varfilter Command To Filter Variants.

0

Entering edit mode

11.7 years ago

shilpy ▴ 20

How to set minimum read depth of 20 while using vcfutils.pl varFilter command to filter variants.

samtools • 3.1k views

ADD COMMENT • link updated 11.7 years ago by Gabriel R. ★ 2.9k • written 11.7 years ago by shilpy ▴ 20

0

Entering edit mode

what did you try ?

ADD REPLY • link 11.7 years ago by Pierre Lindenbaum 164k

score 2 · Answer 1 · 2013-04-01

2

Entering edit mode

11.7 years ago

Gabriel R. ★ 2.9k

vcfutils.pl varFilter -d 20

ADD COMMENT • link 11.7 years ago by Gabriel R. ★ 2.9k

0

Entering edit mode

Thanks ! I got it now.

ADD REPLY • link 11.7 years ago by shilpy ▴ 20