Question

Where To Find Mirna Related Microarray Data For Leukemia Patients?

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11.7 years ago

jlshi.nudt ▴ 240

I want to find as many as possible microarray data for miRNA. Is anyone familiar with this kind of data?

mirna microarray • 3.8k views

ADD COMMENT • link updated 10.8 years ago by zhxq09 ▴ 150 • written 11.7 years ago by jlshi.nudt ▴ 240

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did you checked GEO: http://www.ncbi.nlm.nih.gov/gds/?term=leukemia+mirna

ADD REPLY • link 11.7 years ago by Rm 8.3k

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I've checked GEO, but I wander there maybe some special topics about miRNA expression genome-wide. Thank you.

ADD REPLY • link 11.7 years ago by jlshi.nudt ▴ 240

score 2 · Answer 1 · 2013-04-03

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11.7 years ago

ancient_learner ▴ 680

check this http://mimirna.centenary.org.au/mep/formulaire.html It contains the tissue specific expression profile data including various cancers.

ADD COMMENT • link 11.7 years ago by ancient_learner ▴ 680

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Thank you, these data and tools are helpful.

ADD REPLY • link 11.7 years ago by jlshi.nudt ▴ 240

score 2 · Answer 2 · 2013-04-03

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11.7 years ago

ff.cc.cc ★ 1.3k

HI, I suggest these:

-TCGA: https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=LAML&diseaseName=Acute%20Myeloid%20Leukemia

-ArrayExpress: http://www.ebi.ac.uk/arrayexpress/

ADD COMMENT • link 11.7 years ago by ff.cc.cc ★ 1.3k

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Thank you, TCGA is very useful to me.

ADD REPLY • link 11.7 years ago by jlshi.nudt ▴ 240

score 0 · Answer 3 · 2014-02-12

You can use starBase Pan-Cancer Analysis Platform . starBase Pan-Cancer Analysis Platform is designed for deciphering Pan-Cancer Networks of lncRNAs, miRNAs, ceRNAs and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (>6000 samples) from The Cancer Genome Atlas (TCGA) Data Portal (all data available without limitations).

starBase generated Pan-Cancer networks of CLIP-Seq experimentally supported miRNA-lncRNA and miRNA-mRNA interactions.

Pan-Cancer miRNA-mRNA interactions can be available at http://starbase.sysu.edu.cn/targetSite.php