Which Genome Browser Can Show Input Reads And Ip Reads Profile In One Track?

Question

[chentong.biology]

Hi, all

I wonder if there is any genome browser can show control profile and IP profile in one track or strand-specific RNA-Seq in one track?

I usually use IGV, local browers are preferred. Web based browsers are also a nice choice.

Just like the picture below. Picture from here.

Thanks very much!

Tong

I do not know why pictures can not be showed. Sorry!

Please click http://biowhat.ucsd.edu/homer/ngs/ucsc.hubExample.png and http://biowhat.ucsd.edu/homer/ngs/ucsc.hubRNA.png.

[Istvan Albert]

ah sorry looks like a bug in the image embedding I will fix it

[Istvan Albert]

the bugfix has been enabled and the images should show up properly

[chentong.biology]

Thanks very much, Istvan. You are so cool!

Answer 1

[Sukhi Singh]

Your link also points to UCSC browser. i wrote a minimal tutorial in my blog, which will give you a head start.

Overlay Multiple Tracks In Ucsc Browser [Quick Minimal Tutorial]

[chentong.biology]

Thanks for the great tutorial. I wonder if there is other genome browser to do this. I do not use UCSC usually. BTW, great blog!

[Sukhi Singh]

Hmmm, not sure. Thanks for the like!!

[chentong.biology]

Thanks! This is the working answer I get from here and IGV google group.