Rae Work With Tcga Cnv Data

Question

[J.F.Jiang]

Hi all,

For those who are familar with RAE for CNV analysis, I want to ask which data should I use to obtain the CNV*sample matrix as GBM_MSKCC

RAE uses the segment output of DNAcopy as the input, however I still have no idea which level of data should I use, level2 or level3？ is there any tutorial for RAE&DNAcopy?

Or just could offer the Rscript for me to process the data.

Thanks