How Can I Download Or Get A Pathway List From Kegg

Question

[rezwan.02]

Friends, I need help. The following link is graphical representation of metabolic pathways but how can I download or get the pathway list? I used pathway entry option before. but from last few days it is not working. Please help me out.

http://www.genome.jp/kegg-bin/show_pathway?sty01100

[Neilfws]

What do you mean by "get the pathway list"? A list of genes / gene products involved in the pathway?

[Naren]

Do you need list of all pathways or list for pathways found in your data?

Answer 1

[Naren]

CLICK this and you will get a htext list of all pathways
Enjoy.

Mind that these lists are frequently updated. Check latest list at http://www.kegg.jp/kegg-bin/get_htext?ko00001.keg then click download htext.

Answer 2

[Khader Shameer]

You can use REST based KEGG API to retrieve pathway list or other information.

• List of pathways here from sty
• Components of sty pathway

Answer 3

[fubioinf]

You can use the CPDB for a pathway / gene mapping for ALL major websites like kegg or wikipathways in one file in the download section. http://cpdb.molgen.mpg.de If you are only interested in KEGG, you can still grep it. In the download section, you will find additional GO Term/Gene mappings.

Answer 4

[k.nirmalraman]

There is a nice collection of Genesets from Broad Institute as part of GSEA in MSigDB.

I am not sure if KEGG is still available for downloading.. Others may correct me if I am wrong.