Question

Mapping Genes On Chromosomes

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11.4 years ago

hothriananya ▴ 70

Can anyone suggest an alternative tool for Positional gene enrichment(PGE)? Where I can map gene id's to relative chromosome.

mapping genes chromosome • 5.5k views

ADD COMMENT • link updated 10.9 years ago by Charles Warden 8.3k • written 11.4 years ago by hothriananya ▴ 70

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An "alternative" to what tool have you already used? I sometimes use IGV, would this help you. Could could clarify a bit more on exactly what you are looking for?

ADD REPLY • link 11.4 years ago by Josh Herr 5.8k

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Second that. Never heard of positional gene enrichment. What is it?

ADD REPLY • link 11.4 years ago by Zev.Kronenberg 12k

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PGE is a tool to identify the chromosomal regions of genes. http://homes.esat.kuleuven.be/~bioiuser/pge/

ADD REPLY • link 11.4 years ago by hothriananya ▴ 70

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I used PGE as an alternate to IGV.

ADD REPLY • link 11.4 years ago by hothriananya ▴ 70

score 0 · Answer 1 · 2013-12-14

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10.9 years ago

Charles Warden 8.3k

GATHER can provide enrichment by chromosomal location (with genes using official gene symbols):

http://gather.genome.duke.edu/

ADD COMMENT • link 10.9 years ago by Charles Warden 8.3k