Question

Acquiring Chromosomal Location (Cytoband) For A Large Set Of Genes

0

Entering edit mode

11.6 years ago

mehran.karimzade ▴ 220

I have a large set of genes, and need to acquire chromosomal location (in 1p12.2 format) Does anyone know if there is a website or software package that can do that?

Your help is appreciated.

chromosome • 6.2k views

ADD COMMENT • link updated 11.6 years ago by Pierre Lindenbaum 164k • written 11.6 years ago by mehran.karimzade ▴ 220

score 1 · Answer 1 · 2013-06-10

1

Entering edit mode

11.6 years ago

Pierre Lindenbaum 164k

duplicate of

How to obtain chromosome locus from coordinates

use the ucsc cytobands http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz and bedtools

ADD COMMENT • link 11.6 years ago by Pierre Lindenbaum 164k

0

Entering edit mode

Thank you very much Pierre. But now I need to obtain chromosomal position for each of my genes. Can you tell me how this can be done?

ADD REPLY • link 11.6 years ago by mehran.karimzade ▴ 220

1

Entering edit mode

search biostars.org please. This question has been asked many times.

ADD REPLY • link 11.6 years ago by Pierre Lindenbaum 164k