Hi everyone
I have dna seq dataset for S.cerevisiae genome. I have aligned bam files and the ref seq genome. I would like to know some methods for finding snps from the bam files as input.
I know 2 ways to do it.
Using samtools mpileup and then bcftools and generating a vcf file.
Using GATK unified Genotyper
Any other method if you could tell would be really nice
Hope to hear from you soon
Regards
Varun
You pasted it before me. You won. :-)