How To Get The Itgb1 Mrna Seq In Deuterostomia From Database

Question

[harrymao20]

Put the ( txid33511[Organism:exp] ITGB1 ) into NCBI ,but it`s not work at all

Answer 1

[Pierre Lindenbaum]

Deuterostome is not a 'leaf' in the NCBI taxonomy. Sorry, AFAIK the NCBI doesn't do any reasoning on the tree of life: You'll have to specify an instance of this taxon like 9606(Homo sapiens)

http://www.ncbi.nlm.nih.gov/nuccore/?term=%22Homo+Sapiens%22[ORGN]+ITGB1

you can also loop over the children of "Deuterostome" e.g: How to retrieve all sequences, from NCBI, that belong to a specific txid AND its sub txids? PostgreSQL: Select only taxa which are children of a given taxon using parent taxon ID