Network Of Protein Domain Architecture

Question

[Pappu]

I am trying to build a network based on the domain architecture of a few proteins similar to this: http://www.biomedcentral.com/1471-2105/10/39/figure/F1 Let me know if you have any ideas. Thanks.

Answer 1

[Abhiman]

Please read this paper and use associated supplementary data http://www.ncbi.nlm.nih.gov/pubmed/19720675

Answer 2

[miquelduranfrigola]

3did is a nice resource that can help you: http://3did.irbbarcelona.org/

There is a new beta version which looks pretty nice: http://3did.irbbarcelona.org/beta/