Go Term (Biological Process) At Level 4 For A Gene

Question

[Vikas Bansal]

Dear all,

I know this question has been asked before but I did not find any answer for this. I got a list of 121 genes and my supervisor wants me to extract GO terms at level 4 (terms that are 4 nodes away from the root). I looked into DAVID, REVIGO, AmiGO, SUPERFAMILY, Biomart etc. but did not find any solution. Any suggestions?

Thanks in advance, Vikas

[Bharat Iyengar]

DAVID has level options.. once you upload the list and proceed to analysis, you can select the GO terms level.

[Vikas Bansal]

Thanks for the reply. Just to be sure - Does "GOTERM_BP_4" mean level 4 basic process?

[Bharat Iyengar]

BP = Biological Process

[Vikas Bansal]

Thanks.That was my stupid mistake.