Go Term (Biological Process) At Level 4 For A Gene

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11.5 years ago

Vikas Bansal ★ 2.4k

Dear all,

I know this question has been asked before but I did not find any answer for this. I got a list of 121 genes and my supervisor wants me to extract GO terms at level 4 (terms that are 4 nodes away from the root). I looked into DAVID, REVIGO, AmiGO, SUPERFAMILY, Biomart etc. but did not find any solution. Any suggestions?

Thanks in advance, Vikas

gene-ontology human • 5.3k views

ADD COMMENT • link updated 11.5 years ago by Biostar 20 • written 11.5 years ago by Vikas Bansal ★ 2.4k

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DAVID has level options.. once you upload the list and proceed to analysis, you can select the GO terms level.

ADD REPLY • link updated 11.5 years ago by Eric Normandeau 11k • written 11.5 years ago by Bharat Iyengar ▴ 330

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Thanks for the reply. Just to be sure - Does "GOTERM_BP_4" mean level 4 basic process?

ADD REPLY • link 11.5 years ago by Vikas Bansal ★ 2.4k

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BP = Biological Process

ADD REPLY • link 11.5 years ago by Bharat Iyengar ▴ 330

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Thanks.That was my stupid mistake.

ADD REPLY • link 11.5 years ago by Vikas Bansal ★ 2.4k

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