Question

Searching Genes Are Available In Query Signalling Pathway Or Not?

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11.4 years ago

Abdul Rawoof ▴ 60

I have a list of human breast cancer genes and I want to check that how many genes are available in particular pathway like Wnt, Notch, apoptosis, AML etc. Thanks,

gene kegg biomart pathway • 2.0k views

ADD COMMENT • link updated 11.4 years ago by Pierre Lindenbaum 164k • written 11.4 years ago by Abdul Rawoof ▴ 60

score 0 · Answer 1 · 2013-07-18

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11.4 years ago

Assa Yeroslaviz ★ 1.9k

You can take a look in DAVID. Here you upload your genes and than annotate them using the functional annotation chart. If you choose KEGG as an option you can find the genes participating in the different pathways.

Assa

ADD COMMENT • link 11.4 years ago by Assa Yeroslaviz ★ 1.9k

score 0 · Answer 2 · 2013-07-18

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11.4 years ago

Pierre Lindenbaum 164k

using QuickGO, and GO:0007219=" Notch signaling pathway"

http://www.ebi.ac.uk/QuickGO/GAnnotation?tax=9606&relType=IP&goid=%20GO:0007219%20&format=tsv

ADD COMMENT • link 11.4 years ago by Pierre Lindenbaum 164k