Nebula Galaxy Annotategenes Tool

Question

[sirenbeserker]

I am using the Nebula Galaxy Server to annotate some ChIP-seq peaks, specifically using the annotateGenes tool (NGS: Peak Annotation > Genomic annotation of Chip-Seq peaks). Please could someone tell me which database the tool is pulling annotations from (mm9 build)? Cheers.

Answer 1

[valeyo]

It is RefSeq files from UCSC where identical transcripts and MIRs are removed.

[Omics data mining]

I am trying to use the nebula server to annotate my chip-peaks for the respective intron, exon, promoter category. I uploaded summit.bed (peaks information), genome.gff ,genome.fasta. I am working on some other reference genome which is not listed here. How can I change or add my own custom gff and genome reference for peaks annotation. I have tried all possibility but not fix it. Any suggestion will be appreciated. Please reply me as soon as possible

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