How To Estimate Phenotypic Variance Explained By Significant Snps
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11.4 years ago

How do you estimate phenotypic variance explained by significant SNPs in plant GWAS studies? This question has been answered for CASE/CONTROL studies but my question refers to NON case/control GWAS studies in plants.
snps • 3.8k views
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11.4 years ago
fridhackery ▴ 170

Treat as Case/Control. Case = "mutant" pheotype Control = "wild-type" phenotype
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I am using a diversity panel which can not be divided into case/controls

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Are you dealing with a quantitative trait? Then treat as QTL

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