Question

Comparing Enriched Go Terms Using R Packages

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11.3 years ago

suganyasivagurunathan ▴ 20

What would the best way to compare over enriched GO terms from two different gene list? How would it be possible compare GO terms based on p-value distribution ?

r enrichment bioconductor • 3.6k views

ADD COMMENT • link updated 8.3 years ago by Khader Shameer 18k • written 11.3 years ago by suganyasivagurunathan ▴ 20

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Same problem here, I've got two lists of GO terms generated over the same sequencing dataset by different analyses and want to show their concordance. Most terms do not line up exactly, unless we account for the tree structure somehow.

ADD REPLY • link updated 4.9 years ago by Ram 44k • written 10.5 years ago by karl.stamm 4.1k

Ram · Answer 1 · 2016-08-21

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8.3 years ago

Khader Shameer 18k

Have you tried GOView?

ADD COMMENT • link updated 4.9 years ago by Ram 44k • written 8.3 years ago by Khader Shameer 18k