Is There A Database Or Web Service That Describes Drug-Protein Interaction

Question

[kewalyataruna]

Hi I would like to ask you that is there any database which can help me to explore drug-protein interaction. If I have a protein and know that which drug is recommended to it, now I would like to find out the interaction region of that protein with the drug and if possible I want its result in the form of fasta sequence specifying the interaction according to the protein domain. Thanks

Answer 1

[sarahhunter]

Have you tried the ChEMBL database? I'm not sure it will do everything you want, but it might do some of it...

Answer 2

[casey]

I know it's been a while since this was posted, but just in case this is a helpful tool for a drug-protein binding-affinity prediction that takes in a SMILE sequence and an Amino Acid sequence and returns an integer that represents the binding-affinity. Here is the link to the model overview: https://model.modelforest.ai/binding-model