Question

Where Can I Find Sample Files For (Human) Ngs Scans?

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11.3 years ago

sfcarroll ▴ 80

Where could I find some sample files for (human) NGS scans? I understand the machines produce a number of different formats:

Raw
FASTA/FASTQ
SAM
VCF
Other??

Are there any ftp or downloads sites where I could find some example raw scan data, as well as data that has been processed by the NGS machine?

ngs • 3.9k views

ADD COMMENT • link updated 8.5 years ago by Biostar 20 • written 11.3 years ago by sfcarroll ▴ 80

score 1 · Answer 1 · 2013-08-12

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11.3 years ago

Dan D 7.4k

For everything except basecall data (which I assume is what you mean by "raw data"), check the 1000 Genomes Project. I haven't seen much basecall data in the wild.

ADD COMMENT • link 11.3 years ago by Dan D 7.4k

score 1 · Answer 2 · 2013-08-12

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11.3 years ago

Ashutosh Pandey 12k

You can get most of them here: http://www.1000genomes.org/data

Another site is http://www.sanger.ac.uk/resources/mouse/genomes/

I am not sure what you wan to do though.

ADD COMMENT • link 11.3 years ago by Ashutosh Pandey 12k

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Its same as Deedee. His answer took a while to show up.

ADD REPLY • link 11.3 years ago by Ashutosh Pandey 12k

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Thanks. I'm building a prototype analysis system. and will have access to a NGS machine soon, but I just wanted to get started on the coding.