Quantisnp Analyses

Question

[swrdyani]

Hello there,

I am using QuantiSNP to detect CNVs from the Omni1 quadV1, I run the analyses for all my samples individually and got the row CNV data, do I need to implement the QC inclusion/ exclusion criteria manually, and can anybody walk me through the overlapping of CNV within an individual, between samples, and is PennCNV comparing CNVs from PennCNV, CNVpartition and QuantiSNP ( how can I do so), I would appreciate your quick response, thanks in advance for the help.

Answer 1

[jglessnd]

Use the ParseCNV module PQN_Concord_Inh.pl