Plant Protein-Protein Interaction Study

Question

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I have a list of 100 Arabidopsis proteins. I need interaction among all of these proteins but not other proteins. Is there any database where I can give all of these proteins as an input and get an interaction as an output? or is there any tools? Thank you in advance.

[Hranjeev]

Hi welcome to biostar. You should file this as a question not a tip..

[matted]

Thanks, I just moved it.

Answer 1

[Hamish]

Well I see three interaction databases listed on the GARnet - Proteomic Tool Kit page:

• The Predicted Arabidopsis Interactome Resource (PAIR)
• AtPIN
• IntAct

So they are probably a good place to start looking.

If they don't work out for what you want, you could try looking at IMEx, the services provided by the IMEx members and the various molecular interaction resources listed on Pathguide.