I have many DNA sequences with ~500-1250 bp each. I want to find out possible repeats and palindromics sequences upto length 12 in these sequences. I have tried several web servers without any avail. Here is an example of DNA sequence:
TGTCAGCTACCTTGATGGATTGAGTTTGTTTCGGTCGATGCTCCATCGGGAGAGAGTCTG
CGTCCTGGTCCGAGCAAGTCCCACCAAGTGGCACTTGGCGGCGCCATGTCCTATCTAGTG
CCACCATGTCCGAGGACTTTGATGGCACATGGTGGCACTTGATTTGCCCAAGTCCCACCT
GCTCCGACGTGGACCGACTTCGTGGCACATCGCTATCACCCACTCTACCGTTGAAAAGCC
GAAGTCAAGCGCCGAAAGCTGATCGATTTGCGGTGTGATACGTTGCCAGTGATTCGTTCC
GTGGTTTATGCTTGGCGCACCTACCGCGTCCCCGACGCATCGACTCCGCCGCCATTGCGC
GGCACAAAACGGCCTTCGATCCTTCCGTACGGAGGGGTACTGCAGGGCTCACTGTTCATG
CCGGAAATTGCACCGGCTTTTTTTTCAATCAAATCAAGTGGACCGTGTCGGATAGTGAGG
ACACCGGACACCGCGATACCAAGCCGATTGGCGGTCTGTTTGTGAAAATAGACCGTAGTG
CGGACAATTCCGAAGCCGGACACCGGACAGGTGCTCTGTGGAAATTCCGCGTATGCCCGA
CACCCTTACAGCCGCGTGGCTGGGTGCGGATCACGAAGCCCAAAACACTGCGGCGGGGAT
GATCTGACTTTGGGGTGGGGAGCTGCTTTGCGTGCCGAATGACGGCGAACGCAGGCTTCT
GAGCAAATATCGATCCGGGGGGCGCCACCGGTACCAGAACGGCGCAACAGGTAATCACCC
ATCACGGCAAGGGCCGCAGGCGTGTGGACGCAATCCACGCGAAGGCAGGCTCGCATCCAG
AGATGCACCGGATAGGGTGGCCGCGCAAGCGGTGCGTGAGGCGAGAGCCTTGCATGTTCG
CGAAGCGGACGGTCACGACGCATTGCTTCCATGCTCAGGGCCGATCGGTTTGGCATCGCT
AAAGGACCGGAAGAGTGGTTGTAGGACCGGCAGGGTGGGCCGGCAAGCTGGGGGTGGTAC
CCCGGTGCACCAAGCGGGCAGGGCCAATTCGGGGTTGGCGCCGCCGAGAATTGGGTTGCG
CAGATTTGCGCGGCCGGCGGGATGCGCTTAGCGCGAATAGGAATCCGTC