What Should I Do With This K Mer Content Result As Followings? Should I Give Up Using It?

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11.2 years ago

Tonyzeng ▴ 310

enter image description here

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ADD COMMENT • link 11.2 years ago by Tonyzeng ▴ 310

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I can see only one out of three pictures and even that is reversed (head down). Could you please correct it?

ADD REPLY • link 11.2 years ago by Biomonika (Noolean) 3.2k

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sorry I am the first time to add image

ADD REPLY • link 11.2 years ago by Tonyzeng ▴ 310

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What are you trying to sequence? Can you give us any other stats because just assessing a run based on that graph would be pretty silly.

You could try an artefact filter (fastx) or manually remove all homopolymers

ADD REPLY • link 11.2 years ago by gammyknee ▴ 210

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I am running whole exome sequence of mouse using DNA.

ADD REPLY • link 11.2 years ago by Tonyzeng ▴ 310

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