Question

Resources For Ngs?

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11.2 years ago

enricoferrero ▴ 910

Can anybody please suggest some good resources (guides, tutorials, online courses, books...) for NGS pipelines and workflows? I'm interested in both RNA-seq and ChIP-seq but, given the huge number of tools available and steps involved, I don't really know where to start.

Bonus points if it's R/Bioconductor, but I'm mostly looking for a "golden standard" of NGS data processing and analysis.

Thank you!

ngs rna-seq chip-seq sequencing • 4.0k views

ADD COMMENT • link updated 11.2 years ago by Konrad ▴ 710 • written 11.2 years ago by enricoferrero ▴ 910

score 3 · Answer 1 · 2013-09-24

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11.2 years ago

Zev.Kronenberg 12k

Just one of many good resources:

http://www.bioconductor.org/packages/2.12/data/experiment/html/RnaSeqTutorial.html

ADD COMMENT • link 11.2 years ago by Zev.Kronenberg 12k

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Thanks, I didn't find it myself. Shame is a bit out of date.

ADD REPLY • link 11.2 years ago by enricoferrero ▴ 910

score 2 · Answer 2 · 2013-09-24

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11.2 years ago

Vivek ★ 2.7k

When I did RNA-seq for the first time, this tutorial was pretty helpful.

http://vallandingham.me/RNA_seq_differential_expression.html

ADD COMMENT • link 11.2 years ago by Vivek ★ 2.7k

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Nice one, thanks!

ADD REPLY • link 11.2 years ago by enricoferrero ▴ 910

score 1 · Answer 3 · 2013-09-25

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11.2 years ago

Konrad ▴ 710

Maybe the NGS WikiBook is be useful for you. There is a recent publication about it.

ADD COMMENT • link 11.2 years ago by Konrad ▴ 710

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Thanks, this really looks like what I'm looking for. Looking forward to see it completed.

ADD REPLY • link 11.2 years ago by enricoferrero ▴ 910