Mapping Applications On Hadoop Cluster

Question

[bashwin.u]

Hello,

I would like to know if there are any new mapping applications for paired end data designed to work on hadoop cluster. The mapping applications that i know are CloudBurst (single ended), Crossbow and DistMap.

PS: I dont have a background in Bioinformatics. I am an IT student working on Hadoop infrastructure to assess its performance for an organization.

Thanks

[Sudeep]

This blog could be a good source for you

Answer 1

[Chris Whelan]

You could also look at SEAL:

http://biodoop-seal.sourceforge.net/

My structural variation detection too, Cloudburst, also has commands to parallelize mappings in Hadoop:

https://github.com/cwhelan/cloudbreak