Comparison Of Biological Graphs/Networks

Question

[tigeradab]

If I want to compare two biological networks/graphs (as in graph theory) what are the best clustering methods and which method is to be chosen for comparison? Can anyone suggest a good review/article for the same?

Answer 1

[Sudeep]

This stack exchange thread has a good discussion on choosing a clustering method, see this paper for a benchmark test on clustering methods and you can read through this thread for a comparision of community detection algorithms in igraph library

Answer 2

[kuntal.bhusan]

You can use the tool 'CompNet' available at https://web.rniapps.net/compnet/

Publication link : https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1013-x